Serveur d'exploration sur les relations entre la France et l'Australie

Attention, ce site est en cours de développement !
Attention, site généré par des moyens informatiques à partir de corpus bruts.
Les informations ne sont donc pas validées.

Human–Chimpanzee DNA Sequence Variation in the Four Major Genes of the Renin Angiotensin System

Identifieur interne : 00BF91 ( Main/Exploration ); précédent : 00BF90; suivant : 00BF92

Human–Chimpanzee DNA Sequence Variation in the Four Major Genes of the Renin Angiotensin System

Auteurs : Cécile Dufour [France] ; Didier Casane [France] ; Derek Denton [Australie] ; Jean Wickings [Gabon] ; Pierre Corvol [France] ; Xavier Jeunemaitre [France]

Source :

RBID : ISTEX:11CFDAB785FDAB7DF67F06A969891D282A0E5014

Descripteurs français

English descriptors

Abstract

Abstract: The renin angiotensin system (RAS) is involved in blood pressure control and water/sodium metabolism. The genes encoding the proteins of this system are candidate genes for essential hypertension. The RAS involves four main molecules: angiotensinogen, renin, angiotensin I-converting enzyme, and the angiotensin II type 1 receptor (encoded by the genes AGT, REN, DCP1, and AGTR1, respectively). We performed a molecular screening over 17,037 bp of the coding and 5′ and 3′ untranslated regions of these genes, from three to six common chimpanzees. We identified 44 single-nucleotide polymorphisms (SNPs) in chimpanzee samples, including 18 coding-region SNPs, 5 of which led to an amino acid replacement. We observed common and different features at various sites (synonymous, nonsynonymous, and noncoding) within and between the four chimpanzee genes: (1) the nucleotide diversity at noncoding sites was similar; (2) the nucleotide diversity at nonsynonymous sites was low, probably reflecting purifying selection, except for the AGT gene; (3) the nucleotide diversity at synonymous sites, which was dependent on the G+C content at the third position of the codon, was high, except for the AGTR1 gene. Comparison of the chimpanzee SNPs with those previously reported for humans identified 119 sites with fixed differences (including 62 coding sites, 17 of which resulted in amino acid differences between the species). Analysis of polymorphism within species and divergence between species shed light on the evolutionary constraints on these genes. In particular, comparison of the pattern of mutation at polymorphic and fixed sites between humans and chimpanzees suggested that the high G+C content of the DCP1 gene was maintained by positive selection at its silent sites. Finally, we propose 68 ancestral alleles for the human RAS genes and discuss the implications for their use in future hypertension-susceptibility association studies.

Url:
DOI: 10.1006/geno.2000.6313


Affiliations:


Links toward previous steps (curation, corpus...)


Le document en format XML

<record>
<TEI wicri:istexFullTextTei="biblStruct">
<teiHeader>
<fileDesc>
<titleStmt>
<title xml:lang="en">Human–Chimpanzee DNA Sequence Variation in the Four Major Genes of the Renin Angiotensin System</title>
<author>
<name sortKey="Dufour, Cecile" sort="Dufour, Cecile" uniqKey="Dufour C" first="Cécile" last="Dufour">Cécile Dufour</name>
</author>
<author>
<name sortKey="Casane, Didier" sort="Casane, Didier" uniqKey="Casane D" first="Didier" last="Casane">Didier Casane</name>
</author>
<author>
<name sortKey="Denton, Derek" sort="Denton, Derek" uniqKey="Denton D" first="Derek" last="Denton">Derek Denton</name>
</author>
<author>
<name sortKey="Wickings, Jean" sort="Wickings, Jean" uniqKey="Wickings J" first="Jean" last="Wickings">Jean Wickings</name>
</author>
<author>
<name sortKey="Corvol, Pierre" sort="Corvol, Pierre" uniqKey="Corvol P" first="Pierre" last="Corvol">Pierre Corvol</name>
</author>
<author>
<name sortKey="Jeunemaitre, Xavier" sort="Jeunemaitre, Xavier" uniqKey="Jeunemaitre X" first="Xavier" last="Jeunemaitre">Xavier Jeunemaitre</name>
</author>
</titleStmt>
<publicationStmt>
<idno type="wicri:source">ISTEX</idno>
<idno type="RBID">ISTEX:11CFDAB785FDAB7DF67F06A969891D282A0E5014</idno>
<date when="2000" year="2000">2000</date>
<idno type="doi">10.1006/geno.2000.6313</idno>
<idno type="url">https://api.istex.fr/document/11CFDAB785FDAB7DF67F06A969891D282A0E5014/fulltext/pdf</idno>
<idno type="wicri:Area/Istex/Corpus">000345</idno>
<idno type="wicri:explorRef" wicri:stream="Istex" wicri:step="Corpus" wicri:corpus="ISTEX">000345</idno>
<idno type="wicri:Area/Istex/Curation">000345</idno>
<idno type="wicri:Area/Istex/Checkpoint">002025</idno>
<idno type="wicri:explorRef" wicri:stream="Istex" wicri:step="Checkpoint">002025</idno>
<idno type="wicri:doubleKey">0888-7543:2000:Dufour C:human:chimpanzee:dna</idno>
<idno type="wicri:Area/Main/Merge">00CF04</idno>
<idno type="wicri:source">INIST</idno>
<idno type="RBID">Pascal:01-0049610</idno>
<idno type="wicri:Area/PascalFrancis/Corpus">005D34</idno>
<idno type="wicri:Area/PascalFrancis/Curation">000423</idno>
<idno type="wicri:Area/PascalFrancis/Checkpoint">005C60</idno>
<idno type="wicri:explorRef" wicri:stream="PascalFrancis" wicri:step="Checkpoint">005C60</idno>
<idno type="wicri:doubleKey">0888-7543:2000:Dufour C:human:chimpanzee:dna</idno>
<idno type="wicri:Area/Main/Merge">00D208</idno>
<idno type="wicri:Area/Main/Curation">00BF91</idno>
<idno type="wicri:Area/Main/Exploration">00BF91</idno>
</publicationStmt>
<sourceDesc>
<biblStruct>
<analytic>
<title level="a" type="main" xml:lang="en">Human–Chimpanzee DNA Sequence Variation in the Four Major Genes of the Renin Angiotensin System</title>
<author>
<name sortKey="Dufour, Cecile" sort="Dufour, Cecile" uniqKey="Dufour C" first="Cécile" last="Dufour">Cécile Dufour</name>
<affiliation wicri:level="3">
<country xml:lang="fr">France</country>
<wicri:regionArea>Pathologie Vasculaire et Endocrinologie Rénale, Collège de France, Chaire de Médecine Expérimentale et d'Endocrinologie Rénale, Institut National de la Santé et de la Recherche Médicale U36, 3, rue d'Ulm, 75005, Paris</wicri:regionArea>
<placeName>
<region type="region" nuts="2">Île-de-France</region>
<settlement type="city">Paris</settlement>
</placeName>
</affiliation>
</author>
<author>
<name sortKey="Casane, Didier" sort="Casane, Didier" uniqKey="Casane D" first="Didier" last="Casane">Didier Casane</name>
<affiliation wicri:level="4">
<country xml:lang="fr">France</country>
<wicri:regionArea>Equipe “phylogénie et évolution moléculaires,” UPRESA CNRS 8080, Bâtiment 444, Université Paris-Sud, 91405, Orsay</wicri:regionArea>
<orgName type="university">Université Paris-Sud</orgName>
<placeName>
<settlement type="city">Orsay</settlement>
<region type="region" nuts="2">Île-de-France</region>
</placeName>
</affiliation>
</author>
<author>
<name sortKey="Denton, Derek" sort="Denton, Derek" uniqKey="Denton D" first="Derek" last="Denton">Derek Denton</name>
<affiliation wicri:level="4">
<country xml:lang="fr">Australie</country>
<wicri:regionArea>Howard Florey Institute of Experimental Physiology and Medicine, University of Melbourne, Parkville, Victoria, 3052</wicri:regionArea>
<orgName type="university">Université de Melbourne</orgName>
<placeName>
<settlement type="city">Melbourne</settlement>
<region type="état">Victoria (État)</region>
</placeName>
</affiliation>
</author>
<author>
<name sortKey="Wickings, Jean" sort="Wickings, Jean" uniqKey="Wickings J" first="Jean" last="Wickings">Jean Wickings</name>
<affiliation wicri:level="1">
<country xml:lang="fr">Gabon</country>
<wicri:regionArea>Centre International de Recherche Médicale, Franceville, BP 769</wicri:regionArea>
<wicri:noRegion>BP 769</wicri:noRegion>
</affiliation>
</author>
<author>
<name sortKey="Corvol, Pierre" sort="Corvol, Pierre" uniqKey="Corvol P" first="Pierre" last="Corvol">Pierre Corvol</name>
<affiliation wicri:level="3">
<country xml:lang="fr">France</country>
<wicri:regionArea>Pathologie Vasculaire et Endocrinologie Rénale, Collège de France, Chaire de Médecine Expérimentale et d'Endocrinologie Rénale, Institut National de la Santé et de la Recherche Médicale U36, 3, rue d'Ulm, 75005, Paris</wicri:regionArea>
<placeName>
<region type="region" nuts="2">Île-de-France</region>
<settlement type="city">Paris</settlement>
</placeName>
</affiliation>
</author>
<author>
<name sortKey="Jeunemaitre, Xavier" sort="Jeunemaitre, Xavier" uniqKey="Jeunemaitre X" first="Xavier" last="Jeunemaitre">Xavier Jeunemaitre</name>
<affiliation wicri:level="3">
<country xml:lang="fr">France</country>
<wicri:regionArea>Pathologie Vasculaire et Endocrinologie Rénale, Collège de France, Chaire de Médecine Expérimentale et d'Endocrinologie Rénale, Institut National de la Santé et de la Recherche Médicale U36, 3, rue d'Ulm, 75005, Paris</wicri:regionArea>
<placeName>
<settlement type="city">Paris</settlement>
<region type="région" nuts="2">Île-de-France</region>
</placeName>
</affiliation>
</author>
</analytic>
<monogr></monogr>
<series>
<title level="j">Genomics</title>
<title level="j" type="abbrev">YGENO</title>
<idno type="ISSN">0888-7543</idno>
<imprint>
<publisher>ELSEVIER</publisher>
<date type="published" when="2000">2000</date>
<biblScope unit="volume">69</biblScope>
<biblScope unit="issue">1</biblScope>
<biblScope unit="page" from="14">14</biblScope>
<biblScope unit="page" to="26">26</biblScope>
</imprint>
<idno type="ISSN">0888-7543</idno>
</series>
</biblStruct>
</sourceDesc>
<seriesStmt>
<idno type="ISSN">0888-7543</idno>
</seriesStmt>
</fileDesc>
<profileDesc>
<textClass>
<keywords scheme="KwdEn" xml:lang="en">
<term>Agtr1</term>
<term>Agtr1 gene</term>
<term>Agtr1 genes</term>
<term>Allele</term>
<term>Amino</term>
<term>Amino acid replacement</term>
<term>Ancestral alleles</term>
<term>Angiotensin</term>
<term>Anking</term>
<term>Anking regions</term>
<term>Anking sequences</term>
<term>Blood pressure</term>
<term>Cambien</term>
<term>Candidate genes</term>
<term>Chimpanzee</term>
<term>Coding</term>
<term>Coding sequence</term>
<term>Coding sites</term>
<term>Codon</term>
<term>Common chimpanzees</term>
<term>Corvol</term>
<term>Dcp1</term>
<term>Dcp1 gene</term>
<term>Deletion polymorphism</term>
<term>Dufour</term>
<term>Essential hypertension</term>
<term>Exon</term>
<term>Gene</term>
<term>Genet</term>
<term>Genetic variability</term>
<term>Genetic variation</term>
<term>Genome</term>
<term>Genomic</term>
<term>Genomic structure</term>
<term>Halushka</term>
<term>High content</term>
<term>Human</term>
<term>Human dcp1 gene</term>
<term>Human genes</term>
<term>Human hypertension</term>
<term>Human snps</term>
<term>Hypertension</term>
<term>Interspecific comparison</term>
<term>Intraspecific comparison</term>
<term>Intron</term>
<term>Jeunemaitre</term>
<term>Major genes</term>
<term>Molecular evolution</term>
<term>Mutation</term>
<term>Mutational</term>
<term>Mutational bias</term>
<term>Mutational pressure</term>
<term>Myocardial infarction</term>
<term>Noncoding</term>
<term>Noncoding regions</term>
<term>Noncoding sites</term>
<term>Nonsynonymous</term>
<term>Nonsynonymous sites</term>
<term>Nucleotide</term>
<term>Nucleotide diversity</term>
<term>Nucleotide positions</term>
<term>Nucleotide variations</term>
<term>Pan troglodytes</term>
<term>Polymorphic</term>
<term>Polymorphism</term>
<term>Primer</term>
<term>Recherche medicale</term>
<term>Regulation(control)</term>
<term>Regulatory region</term>
<term>Renin</term>
<term>Renin angiotensin system</term>
<term>Sequence variation</term>
<term>Sequencing</term>
<term>Snp</term>
<term>Soubrier</term>
<term>Substitution</term>
<term>Substitution rate</term>
<term>Synonymous</term>
<term>Synonymous noncoding nonsynonymous</term>
<term>Synonymous sites</term>
<term>Third position</term>
<term>Variant</term>
</keywords>
<keywords scheme="Pascal" xml:lang="fr">
<term>Comparaison interspécifique</term>
<term>Comparaison intraspécifique</term>
<term>Evolution moléculaire</term>
<term>Gène</term>
<term>Homme</term>
<term>Hypertension artérielle</term>
<term>Pan troglodytes</term>
<term>Polymorphisme mononucléotide</term>
<term>Pression sanguine</term>
<term>Régulation</term>
<term>Système renin angiotensine</term>
<term>Variabilité génétique</term>
</keywords>
<keywords scheme="Teeft" xml:lang="en">
<term>Agtr1</term>
<term>Agtr1 gene</term>
<term>Agtr1 genes</term>
<term>Allele</term>
<term>Amino</term>
<term>Amino acid replacement</term>
<term>Ancestral alleles</term>
<term>Angiotensin</term>
<term>Anking</term>
<term>Anking regions</term>
<term>Anking sequences</term>
<term>Blood pressure</term>
<term>Cambien</term>
<term>Candidate genes</term>
<term>Chimpanzee</term>
<term>Coding</term>
<term>Coding sequence</term>
<term>Coding sites</term>
<term>Codon</term>
<term>Common chimpanzees</term>
<term>Corvol</term>
<term>Dcp1</term>
<term>Dcp1 gene</term>
<term>Deletion polymorphism</term>
<term>Dufour</term>
<term>Essential hypertension</term>
<term>Exon</term>
<term>Gene</term>
<term>Genet</term>
<term>Genetic variation</term>
<term>Genome</term>
<term>Genomic</term>
<term>Genomic structure</term>
<term>Halushka</term>
<term>High content</term>
<term>Human dcp1 gene</term>
<term>Human genes</term>
<term>Human hypertension</term>
<term>Human snps</term>
<term>Hypertension</term>
<term>Intron</term>
<term>Jeunemaitre</term>
<term>Major genes</term>
<term>Mutation</term>
<term>Mutational</term>
<term>Mutational bias</term>
<term>Mutational pressure</term>
<term>Myocardial infarction</term>
<term>Noncoding</term>
<term>Noncoding regions</term>
<term>Noncoding sites</term>
<term>Nonsynonymous</term>
<term>Nonsynonymous sites</term>
<term>Nucleotide</term>
<term>Nucleotide diversity</term>
<term>Nucleotide positions</term>
<term>Nucleotide variations</term>
<term>Polymorphic</term>
<term>Polymorphism</term>
<term>Primer</term>
<term>Recherche medicale</term>
<term>Regulatory region</term>
<term>Renin</term>
<term>Renin angiotensin system</term>
<term>Sequence variation</term>
<term>Sequencing</term>
<term>Snp</term>
<term>Soubrier</term>
<term>Substitution</term>
<term>Substitution rate</term>
<term>Synonymous</term>
<term>Synonymous noncoding nonsynonymous</term>
<term>Synonymous sites</term>
<term>Third position</term>
<term>Variant</term>
</keywords>
<keywords scheme="Wicri" type="topic" xml:lang="fr">
<term>Codage</term>
<term>Homme</term>
</keywords>
</textClass>
<langUsage>
<language ident="en">en</language>
</langUsage>
</profileDesc>
</teiHeader>
<front>
<div type="abstract" xml:lang="en">Abstract: The renin angiotensin system (RAS) is involved in blood pressure control and water/sodium metabolism. The genes encoding the proteins of this system are candidate genes for essential hypertension. The RAS involves four main molecules: angiotensinogen, renin, angiotensin I-converting enzyme, and the angiotensin II type 1 receptor (encoded by the genes AGT, REN, DCP1, and AGTR1, respectively). We performed a molecular screening over 17,037 bp of the coding and 5′ and 3′ untranslated regions of these genes, from three to six common chimpanzees. We identified 44 single-nucleotide polymorphisms (SNPs) in chimpanzee samples, including 18 coding-region SNPs, 5 of which led to an amino acid replacement. We observed common and different features at various sites (synonymous, nonsynonymous, and noncoding) within and between the four chimpanzee genes: (1) the nucleotide diversity at noncoding sites was similar; (2) the nucleotide diversity at nonsynonymous sites was low, probably reflecting purifying selection, except for the AGT gene; (3) the nucleotide diversity at synonymous sites, which was dependent on the G+C content at the third position of the codon, was high, except for the AGTR1 gene. Comparison of the chimpanzee SNPs with those previously reported for humans identified 119 sites with fixed differences (including 62 coding sites, 17 of which resulted in amino acid differences between the species). Analysis of polymorphism within species and divergence between species shed light on the evolutionary constraints on these genes. In particular, comparison of the pattern of mutation at polymorphic and fixed sites between humans and chimpanzees suggested that the high G+C content of the DCP1 gene was maintained by positive selection at its silent sites. Finally, we propose 68 ancestral alleles for the human RAS genes and discuss the implications for their use in future hypertension-susceptibility association studies.</div>
</front>
</TEI>
<affiliations>
<list>
<country>
<li>Australie</li>
<li>France</li>
<li>Gabon</li>
</country>
<region>
<li>Victoria (État)</li>
<li>Île-de-France</li>
</region>
<settlement>
<li>Melbourne</li>
<li>Orsay</li>
<li>Paris</li>
</settlement>
<orgName>
<li>Université Paris-Sud</li>
<li>Université de Melbourne</li>
</orgName>
</list>
<tree>
<country name="France">
<region name="Île-de-France">
<name sortKey="Dufour, Cecile" sort="Dufour, Cecile" uniqKey="Dufour C" first="Cécile" last="Dufour">Cécile Dufour</name>
</region>
<name sortKey="Casane, Didier" sort="Casane, Didier" uniqKey="Casane D" first="Didier" last="Casane">Didier Casane</name>
<name sortKey="Corvol, Pierre" sort="Corvol, Pierre" uniqKey="Corvol P" first="Pierre" last="Corvol">Pierre Corvol</name>
<name sortKey="Jeunemaitre, Xavier" sort="Jeunemaitre, Xavier" uniqKey="Jeunemaitre X" first="Xavier" last="Jeunemaitre">Xavier Jeunemaitre</name>
</country>
<country name="Australie">
<region name="Victoria (État)">
<name sortKey="Denton, Derek" sort="Denton, Derek" uniqKey="Denton D" first="Derek" last="Denton">Derek Denton</name>
</region>
</country>
<country name="Gabon">
<noRegion>
<name sortKey="Wickings, Jean" sort="Wickings, Jean" uniqKey="Wickings J" first="Jean" last="Wickings">Jean Wickings</name>
</noRegion>
</country>
</tree>
</affiliations>
</record>

Pour manipuler ce document sous Unix (Dilib)

EXPLOR_STEP=$WICRI_ROOT/Wicri/Asie/explor/AustralieFrV1/Data/Main/Exploration
HfdSelect -h $EXPLOR_STEP/biblio.hfd -nk 00BF91 | SxmlIndent | more

Ou

HfdSelect -h $EXPLOR_AREA/Data/Main/Exploration/biblio.hfd -nk 00BF91 | SxmlIndent | more

Pour mettre un lien sur cette page dans le réseau Wicri

{{Explor lien
   |wiki=    Wicri/Asie
   |area=    AustralieFrV1
   |flux=    Main
   |étape=   Exploration
   |type=    RBID
   |clé=     ISTEX:11CFDAB785FDAB7DF67F06A969891D282A0E5014
   |texte=   Human–Chimpanzee DNA Sequence Variation in the Four Major Genes of the Renin Angiotensin System
}}

Wicri

This area was generated with Dilib version V0.6.33.
Data generation: Tue Dec 5 10:43:12 2017. Site generation: Tue Mar 5 14:07:20 2024